OMOP_5.4_ER_ALL

OMOP_5.4_ER : Model

Entity - observation_period link

Properties
Name Value
Description

 

OBSERVATION_PERIOD

Table Description

This table contains records which define spans of time during which two conditions are expected to hold: (i) Clinical Events that happened to the Person are recorded in the Event tables, and (ii) absense of records indicate such Events did not occur during this span of time.

User Guide

For each Person, one or more OBSERVATION_PERIOD records may be present, but they will not overlap or be back to back to each other. Events may exist outside all of the time spans of the OBSERVATION_PERIOD records for a patient, however, absence of an Event outside these time spans cannot be construed as evidence of absence of an Event. Incidence or prevalence rates should only be calculated for the time of active OBSERVATION_PERIOD records. When constructing cohorts, outside Events can be used for inclusion criteria definition, but without any guarantee for the performance of these criteria. Also, OBSERVATION_PERIOD records can be as short as a single day, greatly disturbing the denominator of any rate calculation as part of cohort characterizations. To avoid that, apply minimal observation time as a requirement for any cohort definition.

ETL Conventions

Each Person needs to have at least one OBSERVATION_PERIOD record, which should represent time intervals with a high capture rate of Clinical Events. Some source data have very similar concepts, such as enrollment periods in insurance claims data. In other source data such as most EHR systems these time spans need to be inferred under a set of assumptions. It is the discretion of the ETL developer to define these assumptions. In many ETL solutions the start date of the first occurrence or the first high quality occurrence of a Clinical Event (Condition, Drug, Procedure, Device, Measurement, Visit) is defined as the start of the OBSERVATION_PERIOD record, and the end date of the last occurrence of last high quality occurrence of a Clinical Event, or the end of the database period becomes the end of the OBSERVATOIN_PERIOD for each Person. If a Person only has a single Clinical Event the OBSERVATION_PERIOD record can be as short as one day. Depending on these definitions it is possible that Clinical Events fall outside the time spans defined by OBSERVATION_PERIOD records. Family history or history of Clinical Events generally are not used to generate OBSERVATION_PERIOD records around the time they are referring to. Any two overlapping or adjacent OBSERVATION_PERIOD records have to be merged into one.

CDM Field User Guide ETL Conventions Datatype Required Primary Key Foreign Key FK Table FK Domain
observation_period_id A Person can have multiple discrete Observation Periods which are identified by the Observation_Period_Id. Assign a unique observation_period_id to each discrete Observation Period for a Person. integer Yes Yes No
person_id The Person ID of the PERSON record for which the Observation Period is recorded. integer Yes No Yes PERSON
observation_period_start_date Use this date to determine the start date of the Observation Period. It is often the case that the idea of Observation Periods does not exist in source data. In those cases, the observation_period_start_date can be inferred as the earliest Event date available for the Person. In insurance claim data, the Observation Period can be considered as the time period the Person is enrolled with a payer. If a Person switches plans but stays with the same payer, and therefore capturing of data continues, that change would be captured in PAYER_PLAN_PERIOD. date Yes No No
observation_period_end_date Use this date to determine the end date of the period for which we can assume that all events for a Person are recorded. It is often the case that the idea of Observation Periods does not exist in source data. In those cases, the observation_period_end_date can be inferred as the last Event date available for the Person. In insurance claim data, the Observation Period can be considered as the time period the Person is enrolled with a payer. date Yes No No
period_type_concept_id This field can be used to determine the provenance of the Observation Period as in whether the period was determined from an insurance enrollment file, EHR healthcare encounters, or other sources. Choose the observation_period_type_concept_id that best represents how the period was determined. Accepted Concepts. A more detailed explanation of each Type Concept can be found on the vocabulary wiki. integer Yes No Yes CONCEPT Type Concept

Data Model Physical
Primary Key Constraint Name xpk_observation_period
Primary Key Clustered Unspecified
Unlogged false

Columns Summary
Column Name Data Type PK / FK Nullable Description
observation_period_id int4 PK No
person_id int4 PK / FK No
observation_period_start_date date No
observation_period_end_date date No
period_type_concept_id int4 PK / FK No

Relationships Summary
Name Begin End
 fpk_observation_period_person_id : Relationship
 person : Entity
 observation_period : Entity
 fpk_observation_period_period_type_concept_id : Relationship
 concept : Entity
 observation_period : Entity

Columns Detail
Name Value
Name observation_period_id
Type int4
Nullable false
Unique false
Primary Key true
Index false
Length 0
Scale 0
Id Generator native
Foreign Key false
Generated Unspecified
Sync To Attribute Yes

Name Value
Name person_id
Type int4
Nullable false
Unique false
Primary Key true
Index false
Length 0
Scale 0
Id Generator native
Foreign Key true
Generated Unspecified
Sync To Attribute Yes

Name Value
Name observation_period_start_date
Type date
Nullable false
Unique false
Primary Key false
Index false
Type Name date
Length 0
Scale 0
Id Generator native
Foreign Key false
Generated Unspecified
Sync To Attribute Yes

Name Value
Name observation_period_end_date
Type date
Nullable false
Unique false
Primary Key false
Index false
Type Name date
Length 0
Scale 0
Id Generator native
Foreign Key false
Generated Unspecified
Sync To Attribute Yes

Name Value
Name period_type_concept_id
Type int4
Nullable false
Unique false
Primary Key true
Index false
Length 0
Scale 0
Id Generator native
Foreign Key true
Generated Unspecified
Sync To Attribute Yes

Relationships Detail
Name Value
Name fpk_observation_period_person_id
Foreign Key
observation_period
 person_id : Column
Primary Key
person
 person_id : Column
To Multiplicity 0..*
From Multiplicity 1
Sync To Association Yes
Data Model Physical

Name Value
Name fpk_observation_period_period_type_concept_id
Foreign Key
observation_period
 period_type_concept_id : Column
Primary Key
concept
 concept_id : Column
To Multiplicity 0..*
From Multiplicity 0..1
Sync To Association Yes
Data Model Physical

Appears In
Diagram
 Standardized_Tables : Entity Relationship Diagram
 Vocabulary_With_Standard : Entity Relationship Diagram
OMOP_5.4_ER_ALL